knitr: A General-Purpose Package for Dynamic Report Generation in R

Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.

Version: 1.12.3
Depends: R (≥ 3.0.2)
Imports: evaluate (≥ 0.8), digest, formatR, highr, markdown, stringr (≥ 0.6), yaml (≥ 2.1.5), methods, tools
Suggests: testit, rgl (≥ 0.95.1201), codetools, rmarkdown, tikzDevice (≥ 0.9), XML, RCurl
Published: 2016-01-22
Author: Yihui Xie [aut, cre], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Ben Baumer [ctb], Brian Diggs [ctb], Cassio Pereira [ctb], David Robinson [ctb], Donald Arseneau [ctb, cph] (the framed package at inst/misc/framed.sty), Doug Hemken [ctb], Duncan Murdoch [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Gregoire Detrez [ctb], Hadley Wickham [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Jeff Arnold [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Noam Ross [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Romain Francois [ctb], Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb]
Maintainer: Yihui Xie <xie at yihui.name>
BugReports: https://github.com/yihui/knitr/issues
License: GPL-2 | GPL-3 [expanded from: GPL]
URL: http://yihui.name/knitr/
NeedsCompilation: no
SystemRequirements: Package vignettes based on R Markdown v2 require Pandoc (http://pandoc.org). The function rst2pdf() and vignettes based on reStructuredText require rst2pdf (https://github.com/rst2pdf/rst2pdf).
Citation: knitr citation info
Materials: README NEWS
In views: ReproducibleResearch
CRAN checks: knitr results

Downloads:

Reference manual: knitr.pdf
Vignettes: Custom Print Methods
Not an Introduction to knitr
knitr Reference Card
Display Tables with the JavaScript Library DataTables
Templating with knit_expand()
An R HTML Vignette with knitr
An R Markdown Vignette with knitr
R Markdown with the Docco Classic Style
R Markdown with the Docco Linear Style
Package source: knitr_1.12.3.tar.gz
Windows binaries: r-devel: knitr_1.12.3.zip, r-release: knitr_1.12.3.zip, r-oldrel: knitr_1.12.3.zip
OS X Mavericks binaries: r-release: knitr_1.12.3.tgz, r-oldrel: knitr_1.12.3.tgz
Old sources: knitr archive

Reverse dependencies:

Reverse depends: BrailleR, EasyHTMLReport, OutbreakTools, PopGenReport, rmdHelpers, sdcMicro, SOMbrero, spThin, svSweave, tufterhandout
Reverse imports: ADPclust, assertive, BEQI2, compareGroups, condformat, confidence, easyformatr, ezknitr, FactoMineR, formattable, gistr, Gmisc, Greg, gSEM, htmlTable, interAdapt, kfigr, Kmisc, knitLatex, knitrBootstrap, liftr, lintr, multisensi, ncappc, opencpu, optiRum, pixiedust, qmethod, qwraps2, rchallenge, RcppFaddeeva, ReporteRs, rglwidget, rite, rleafmap, rmarkdown, rmdformats, rNMF, rtable, rticles, survMisc, tufte, tutorial, ucbthesis, umx, userfriendlyscience, wq
Reverse suggests: abbyyR, ABHgenotypeR, ACEt, acmeR, ACSNMineR, additivityTests, adegraphics, afex, agridat, ahp, alakazam, alleHap, alm, ameco, amen, analogsea, AncestryMapper, anim.plots, ANOM, Anthropometry, aoos, aop, apcluster, apex, aplore3, apricom, apsimr, archivist, argparse, ArgumentCheck, ARPobservation, ARTool, aRxiv, ASMap, aSPU, assertr, ASSISTant, atsd, attribrisk, AUtests, AutoModel, AzureML, babar, BACA, BacArena, backblazer, backpipe, backShift, BayesFactor, bayesGDS, BayesMAMS, bayesmeta, BayesSingleSub, bbmle, Bchron, bcpa, bcRep, bdscale, beanz, bedr, benchmarkme, berryFunctions, BeviMed, BIGDAWG, bigmemory, binomen, bio3d, biogas, bioinactivation, biom, biomartr, biorxivr, biotic, bizdays, BlandAltmanLeh, bnstruct, bodenmiller, bold, boostr, boxr, bpa, bridgedist, brms, broom, brotli, bst, BTYD, camtrapR, captioner, captr, caretEnsemble, caRpools, cartography, cate, cati, causaldrf, causalsens, Causata, cbsodataR, ccaPP, cda, cdfquantreg, censusr, checkmate, checkpoint, ChemoSpec, chipPCR, CHNOSZ, choroplethr, circlize, cIRT, ckanr, clarifai, classyfire, cleangeo, clifro, climwin, clusrank, ClustVarLV, coala, cocoreg, cocorresp, codingMatrices, codyn, coenocliner, coop, copula, corrgram, corrplot, cosinor, covmat, covr, cowplot, cowsay, crawl, credule, crimelinkage, Crossover, crunch, ctmm, ctsem, curl, curlconverter, cycleRtools, D2C, d3heatmap, DAAG, dagitty, Dark, datacheckr, datafsm, datapack, dataRetrieval, datastepr, data.table, data.tree, DBI, ddR, decisionSupport, decode, decompr, deductive, DeLorean, dendextend, dendrometeR, dendsort, denovolyzeR, densratio, desiR, DESP, desplot, devtools, diagonals, DiagrammeR, diezeit, DiffusionRgqd, DiffusionRjgqd, digest, discreteRV, diseasemapping, diskImageR, DiversityOccupancy, DLMtool, DNAprofiles, doRNG, DOT, dotwhisker, dpcR, dplR, dplyr, drat, drLumi, DT, DVHmetrics, dynsim, easypackages, easypower, easyVerification, EBglmnet, ecb, ECctmc, ecd, Ecdat, ecoengine, EcoSimR, ECOSolveR, edeaR, edfReader, edgebundleR, EEM, eemR, eeptools, EFDR, ega, EGRET, EGRETci, eHOF, elastic, EMbC, emojifont, EmpiricalCalibration, emuR, enigma, enpls, ensurer, epandist, EpiBayes, EpiModel, ESGtoolkit, etma, eurostat, eva, exams, excel.link, ExomeDepth, explor, exploreR, expp, ExtDist, eyelinker, eyetrackingR, ezec, factoextra, FAOSTAT, fastAdaboost, fastR, FeatureHashing, fgpt, finreportr, fitcoach, flexsurv, flowr, flows, fmrs, forestplot, formatR, fpCompare, fractional, frailtypack, frailtySurv, FSA, fslr, fulltext, FunChisq, funModeling, futureheatwaves, FuzzyAHP, fuzzyjoin, FuzzyNumbers, gamclass, gapmap, gelnet, GenCAT, gender, geneSLOPE, geoaxe, geohash, geojsonio, geoknife, GeoLight, geostatsp, gesis, GetoptLong, getPass, GetTDData, GFD, GGally, ggalt, ggcorrplot, ggdendro, gge, ggenealogy, ggExtra, ggiraph, ggmcmc, ggnetwork, ggplot2, ggpmisc, ggRandomForests, ggraptR, ggrepel, ggsci, ggspectra, ggswissmaps, ggthemes, ggvis, GiRaF, gitlabr, gjam, glarma, glmm, glmmsr, glmnet, GlobalOptions, glycanr, gmailr, GMCM, gMCP, gmwm, GoodmanKruskal, googleAuthR, googlesheets, googleVis, GOplot, GPareto, gpuR, graticule, gridExtra, growthcurver, growthrates, grpSLOPE, gsDesign, gsEasy, guess, gunsales, gutenbergr, gvc, haplotyper, HarmonicRegression, haven, hazus, hddplot, hdm, hdnom, hdr, heatmap3, heemod, hextri, HHG, hierband, hierfstat, highcharter, HighDimOut, highr, highSCREEN, hisse, HistData, HiveR, Hmisc, homomorpheR, hot.deck, hpoPlot, hSDM, htmltab, htmlwidgets, httr, humaniformat, HWxtest, HydeNet, hyfo, hysteresis, IalsaSynthesis, iBUGS, icd, icd9, ifaTools, imager, import, imputeTestbench, inbreedR, IncucyteDRC, iNEXT, inferference, Information, InformationValue, inpdfr, intercure, intergraph, internetarchive, interplot, investr, iptools, ISOpureR, itsadug, jaatha, JacobiEigen, jiebaR, jqr, jrvFinance, js, jsonlite, jtrans, jug, junr, kantorovich, kelvin, KFAS, kitagawa, knitcitations, knockoff, kyotil, labelled, labelrank, lasvmR, latex2exp, lawn, lazyeval, lctools, ldamatch, ldatuning, LDAvis, leaflet, learningr, lettercase, LexisPlotR, lfe, lifecontingencies, lightsout, likelihoodAsy, linbin, lineup, lintools, list, littler, lme4, localsolver, LocFDRPois, LogisticDx, logisticPCA, longpower, loo, loopr, ltbayes, lubridate, lucid, luzlogr, LW1949, maddison, madness, magrittr, MakefileR, MALDIquant, MALDIquantForeign, manifestoR, mapmisc, mapr, markdown, markmyassignment, markophylo, markovchain, MarkowitzR, matchingMarkets, matchingR, matconv, mateable, matlib, matrixStats, MaxentVariableSelection, MazamaSpatialUtils, mbbefd, mclust, mcmcse, mcprofile, MDMR, MeanShift, medicalrisk, megaptera, memgene, memisc, merTools, MetaCycle, metafolio, metaMix, metricsgraphics, mi, miniCRAN, MInt, mirt, mirtCAT, miscset, mixedMem, mixpack, mkin, mldr, mlr, mlsjunkgen, mlt.docreg, MM2S, MM2Sdata, modellingTools, modules, molaR, Momocs, mongolite, monitoR, monographaR, MonoPhy, moonBook, morse, MortalitySmooth, mosaic, mountainplot, moveHMM, mplot, MPSEM, MPTinR, mptools, msmtools, mtconnectR, multiplex, multirich, mvMORPH, MVN, mvnfast, mvQuad, mwaved, mycor, myTAI, NAM, nat.nblast, nCal, ndtv, neotoma, nestedRanksTest, networkreporting, neuroim, nhanesA, nicheROVER, NIPTeR, NlsyLinks, NMF, NNLM, NNTbiomarker, nonlinearTseries, nonnest2, NORTARA, nplr, nproc, nullabor, oai, OasisR, obAnalytics, oce, OECD, olctools, OLScurve, ontologyIndex, ontologyPlot, ontologySimilarity, openssl, openxlsx, optigrab, optmatch, optparse, ores, OrgMassSpecR, orsifronts, OrthoPanels, osmplotr, PAC, packcircles, packrat, pacman, pagenum, pageviews, pairsD3, palr, pander, PANICr, papeR, ParallelForest, patchDVI, pathdiagram, pbo, pca3d, pcaBootPlot, pcadapt, pcev, pdftables, PDQutils, peakPick, pergola, permPATH, pez, PGRdup, phangorn, phonenumber, photobiology, photobiologyWavebands, phylobase, physiology, piecewiseSEM, pitchRx, pkgmaker, PKNCA, planar, plotly, plotROC, plspm, pmc, pmmlTransformations, pointRes, polidata, pollstR, polyfreqs, pomp, popEpi, poppr, postGIStools, poweRlaw, PP, prcbench, precrec, prepdat, preproviz, prism, prodigenr, proftools, proportion, prospectr, PSAboot, psd, pseval, PSF, pubprint, pumilioR, pweight, qdap, QICD, qicharts, qlcData, qlcMatrix, QoLR, qqman, qrmtools, qtlcharts, qualvar, quanteda, QuantumClone, quickmapr, quickReg, quipu, R2admb, R6, RADanalysis, radarchart, radiomics, raincpc, rainfreq, ramify, randomizeR, randomizr, rangeMapper, rbhl, rbison, Rblpapi, rclinicaltrials, RClone, Rcmdr, RcmdrPlugin.KMggplot2, RcmdrPlugin.MA, RCMIP5, RcppOctave, RcppParallel, RcppShark, rcrossref, Rd2roxygen, rdatacite, rddtools, Rdistance, RDML, rdnb, rDVR, readr, rebird, recmap, reconstructr, recosystem, reda, REDCapR, redland, rEDM, RefManageR, refset, remoter, rentrez, repijson, repo, reports, rerddap, REST, reval, RevEcoR, rex, rfishbase, rfml, RGA, rgbif, rgeolocate, rgho, rgl, rglobi, rhandsontable, rio, rivr, rjade, RJafroc, r.jive, Rknots, rmetasim, rmongodb, rnbn, RndTexExams, rnetcarto, RNewsflow, RNeXML, rngtools, rnn, rnoaa, roahd, robCompositions, robotstxt, rococo, RODBCext, rollply, rotations, rotl, roxygen2, rpcdsearch, rpdo, rpf, rplexos, rplos, rprime, rprintf, rprojroot, rrefine, RRreg, R.rsp, RRTCS, RSAGA, rsatscan, rsconnect, rscorecard, rsdmx, RSelenium, RSentiment, rsnps, RSNPset, rspa, rstanarm, rsunlight, rtimes, rtype, rucm, rUnemploymentData, runjags, rvertnet, rvest, RVPedigree, rWBclimate, RxODE, rYoutheria, sadists, saeSim, SAGA, SALTSampler, samplesize4surveys, satellite, scatterD3, scenario, SCGLR, SchemaOnRead, schumaker, SciencesPo, scmamp, scrm, scrubr, sdm, SDR, searchConsoleR, secr, secrdesign, secrlinear, seqHMM, sequences, seroincidence, servr, settings, SharpeR, shazam, shiny, shinyjs, shinystan, shotGroups, shrink, SIBER, simcausal, SimDesign, simmer, simmr, SIMMS, simPH, simr, SimReg, simTool, sinaplot, sitmo, skellam, sla, Sleuth2, Sleuth3, SLOPE, smacof, smcfcs, snht, snplist, snp.plotter, snpStatsWriter, sodium, softImpute, solr, solrium, sorvi, sotkanet, soundecology, spacetime, SpaDES, spaero, sparseHessianFD, sparseMVN, sparsevar, SpatialPosition, spcadjust, spcosa, spdep, spdynmod, spiders, spocc, spoccutils, sprinter, sprintfr, spsann, srvyr, ss3sim, ssizeRNA, SSRMST, StMoMo, stplanr, stpm, strataG, stringgaussnet, stringr, strptimer, stubthat, SuperExactTest, surveillance, surveybootstrap, survminer, SurvRank, survSNP, sValues, svdvis, svgPanZoom, SwarmSVM, sweidnumbr, synlik, systemicrisk, syuzhet, tableone, tabplot, tadaatoolbox, tagcloud, taxize, TCGA2STAT, tcR, tensr, TESS, tester, texmex, text2vec, textreg, textreuse, tibble, TiddlyWikiR, tidyjson, tidyr, tidytext, tigerstats, tigris, tikzDevice, timeSeq, TippingPoint, TITAN2, titrationCurves, tlm, tmap, tmlenet, tmle.npvi, TopKLists, traits, transcribeR, treemap, treescape, trimr, trip, trustOptim, TSMining, tsna, TSTr, tuber, turner, TurtleGraphics, tvm, UNF, unitedR, UpSetR, urlshorteneR, urltools, USAboundaries, utiml, V8, validate, VARsignR, vcfR, vdg, vdmR, vegalite, vegan, vegdata, viridis, ViSiElse, visNetwork, VSE, vtreat, walkr, warbleR, water, WaterML, Wats, wbstats, weathermetrics, webreadr, webshot, WeightedCluster, wellknown, WHO, whoapi, WikidataR, wikipediatrend, WikipediR, wildlifeDI, wiod, WiSEBoot, wordbankr, wrassp, WRS2, wrswoR, wrswoR.benchmark, wsrf, WufooR, xgboost, XNomial, xseq, xtable, yakmoR, yCrypticRNAs, yummlyr, Zelig, ZeligChoice, zooaRch, zoon, ztable
Reverse enhances: htmltools, kimisc, networkD3, patchSynctex, threejs